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Answer: affy::rma results doesn't match with ncbi website
by
James W. MacDonald
68k
Please note that RMA is a method intended to normalize and summarize a set of samples rather than a single sample (it doesn't make much sen…
Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
by
shepherl
4.1k
Can you try `BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene", type="source")`
Comment: Limma - Complex 2-way multi-level contrast with paired samples
by
Elizabeth
•
0
Thank you very much, James! I wasn't aware of voomLmFit, and using it gave me more logical DEG. I really appreciate your time and effort!
Answer: affy::rma results doesn't match with ncbi website
by
ATpoint
★
4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be
```
adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
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Michael Love
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